| Name of School | Total enrolment | Type of School | Status of School | Name of County | Name of Sub County |
| Changamwe secondary school | 832 | Day/ boarding (girls) | County | Mombasa | Changamwe |
| MWIJABU SEC SCHOOL | 609 | Day | County | Mombasa | CHANGAMWE |
| Bomu Secondary | 483 | Day | County | Mombasa | Changamwe |
| CHAANI SECONDARY SCHOOL | 270 | Day | County | Mombasa | CHANGAMWE |
| JOMVU GIRLS HIGH SCHOOL | 465 | DAY & BOARDING GIRLS | Sub County | Mombasa | JOMVU |
| Kajembe High School | 816 | Day | County | Mombasa | Jomvu |
| KAJEMBE HIGH SCHOOL | 816 | Day | Sub County | Mombasa | Jomvu |
| Miritini Complex High school | 720 | Day | Sub County | Mombasa | Jomvu |
| Miritini Secondary School | 648 | Day | Sub County | Mombasa | Jomvu |
| Concordia Secondary School | 562 | Mixed Day | Sub County | Mombasa | Kisauni |
| Hassan Joho girls’ secondary school | 472 | Day | Sub County | Mombasa | Kisauni |
| Marimani secondary school | 280 | Mixed day | Sub County | Mombasa | Kisauni |
| Mtopanga secondary school | 604 | Day | Sub County | Mombasa | Kisauni |
| KASHANI SECONDARY SCHOOL | 316 | MIXED DAY SCHOOL | Sub County | Mombasa | KISAUNI |
| Khadija sec school | 329 | Mixed day school | Sub County | Mombasa | Kisauni |
| Mwakirunge secondary school | 400 | Day | Sub County | Mombasa | Kisauni |
| Shimolatewa school | 1435 | Boarding Boys | National | Mombasa | Kisauni |
| Moi Forces Academy Mombasa | 1035 | Mixed day and boarding | County | Mombasa | Likoni |
| The Salvation Army Likoni High School For The Visually Impaired. | 60 | Mixed Boarding | National | Mombasa | Likoni |
| Bububu boys secondary School | 210 | Boarding Boys | County | Mombasa | Likoni |
| Puma Secondary School | 443 | Mixed Day | Sub County | Mombasa | Likoni |
| Mtongwe Girls secondary | 413 | Day | County | Mombasa | Likoni |
| Mweza secondary school | 313 | Day | Sub County | Mombasa | Likoni |
| Mrima mixed sec school | 678 | Mixed day | Sub County | Mombasa | Likoni |
| Mwahima secondary school | 541 | Day | Sub County | Mombasa | Likoni |
| Likoni Sec School | 670 | Day | Sub County | Mombasa | Likoni |
| Shikaadabu Sec School | 835 | Day | County | Mombasa | Likoni |
| Mishi Mboko Girls secondary | 149 | Boarding Girls | Sub County | Mombasa | Likoni |
| MVITA BOYS SECONDARY SCHOOL | 532 | BOYS SCHOOL | Sub County | Mombasa | MOMBASA (MVITA) |
| SHARIFF NASSIR GIRLS SECONDARY | 544 | Day | Sub County | Mombasa | MVITA |
| Serani SECONDARY | 431 | Day | Sub County | Mombasa | Mvita |
| KAA CHONJO SECONDARY SCHOOL | 25 | Day | Sub County | Mombasa | MVITA |
| Star of the sea girls high school | 919 | Day | Sub County | Mombasa | Mvita |
| Sheikh Abdalla Alfarsy girls sec school | 824 | Day | Sub County | Mombasa | Mvita |
| Coast girls high school | 820 | Day | County | Mombasa | Mvita |
| Tudor day sec school | 788 | Day | Sub County | Mombasa | MVITA |
| MBARAKI GIRLS SEC SCHOOL | 552 | DAY GIRLS | Sub County | Mombasa | MVITA |
| Sacred heart high school | 440 | Day | Sub County | Mombasa | Mvita |
| Khamis secondary School | 539 | Day | Sub County | Mombasa | Mvita |
| Mama Ngina Girls Mombasa | 827 | Boarding Girls | National | Mombasa | Mvita |
| Makupa Boys SECONDARY school | 430 | Day | Sub County | Mombasa | Mvita |
| Allidina visram high school | 884 | Day | Sub County | Mombasa | Mvita |
| Tononoka Secondary school | 465 | Day | Sub County | Mombasa | Mvita |
| TUDOR DAY SECONDARY SCHOOL | 788 | Day | Sub County | Mombasa | MVITA – SUB COUNTY |
| Makande girls secondary school | 404 | Day | Sub County | Mombasa | Mvita (mombasa) |
| Frere town sec school | 456 | Mixed day | Sub County | Mombasa | Nyali |
| Maweni mixed secondary | 688 | Day | Sub County | Mombasa | Nyali |
| MOMBASA SECONDARY SCHOOL FOR THE PHYSICALLY HANDICAPPED | 297 | Boarding Boys | National | Mombasa | NYALI |
| KONGOWEA SECONDARY SCHOOL | 324 | Mixed Day | Sub County | Mombasa | Nyali |
| Mohamed Ali Girls Sec | 128 | Day | Sub County | Mombasa | Nyali |
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