County Schools in Kenya form the third tier of secondary schools; after National and Extra County schools, respectively. The schools admit students from majorly within the country. Admissions to these schools is done online by the Ministry of Education. The Schools are either of Mixed or single sex type.
Here are the County Schools in Busia County:
| School Code | School Name | Category | Type |
| 35601101 | ST. MATHIAS’ BUSIA SECONDARY SCHOOL | County | Boys |
| 35601102 | OUR LADY OF MERCY | County | Girls |
| 35606104 | MODING HIGH SCHOOL | County | Mixed |
| 35606106 | KATAKWA SECONDARY SCHOOL | County | Mixed |
| 35606107 | S A ABOLOI SECONDARY SCHOOL | County | Mixed |
| 35606108 | ALBERT EKIRAPA SECONDARY SCHOOL | County | Mixed |
| 35606116 | ST MARTIN’S MWARI SECONDARY SCHOOL | County | Mixed |
| 35606202 | ST JOSEPHS KOCHOLIA SECONDARY SCHOOL | County | Mixed |
| 35606203 | ST.THOMAS AMAGORO GIRLS SECONDARY SCHOOL | County | Girls |
| 35606204 | ST. AUGUSTINE KAMOLO SECONDARY SCHOOL | County | Mixed |
| 35610102 | JOHN OSOGO SECONDARY SCHOOL | County | Boys |
| 35610103 | ST.CECILIA NAMENYA GIRLS SCHOOL | County | Girls |
| 35610106 | ST ANNE’S BUNYALA GIRLS SECONDARY SCHOOL | County | Girls |
| 35620102 | ST. MARY’S AMUKURA GIRLS HIGH | County | Girls |
| 35623101 | BUHUYI SECONDARY SCHOOL | County | Mixed |
| 35623103 | ST. CLARE BUTULA GIRLS’ SECONDARY SCHOOL | County | Girls |
| 35623104 | LUGULU A.C SECONDARY SCHOOL | County | Boys |
| 35623106 | BUKHALALIRE SECONDARY SCHOOL | County | Boys |
| 35623107 | ST. JOSEPH’S BUMUTIRU SECONDARY SCHOOL | County | Mixed |
| 35623108 | BUJUMBA BOYS’ SECONDARY SCHOOL | County | Boys |
| 35623124 | BUJUMBA GIRLS’ SECONDARY SCHOOL | County | Girls |
| 35629104 | ST THOMAS AQUINAS MADENDE SECONDARY SCHOOL | County | Mixed |
| 35629106 | MALANGA MIXED SECONDARY SCHOOL | County | Mixed |
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