Sub County Schools in Kenya form the lowest cadre of secondary schools; after National, Extra County schools and County Schools, respectively. The schools admit students from majorly within the Sub country; from the immediate locality. The Schools are majorly of Mixed type; though there are a few single sex schools. Students joining these schools are mostly those with the low marks in the Kenya Certificate of Primary Education, KCPE, exams. The schools are in most cases Day Schools; though some are Day and Boarding Schools. These schools form the majority of secondary schools in Kenya and are found in all Counties.
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Here are the Sub County Schools in Marsabit County:
| KNEC Code and School Name | Category | Type |
| 16305102 MARSABIT MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16305104 DAKABARICHA SECONDARY SCHOOL | Sub County | Mixed |
| 16305105 KARARE MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16305203 GADAMOJI HIGH SCHOOL | Sub County | Mixed |
| 16305301 GORO RUKESA MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16305303 DIBAYU HIGH SCHOOL | Sub County | Mixed |
| 16305304 BADASSA MIXED SECONDARY SCHOOL | Sub County | Mixed |
| 16311104 MANYATTA MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16311105 BUTIYE MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16311106 DABEL MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16311107 SESSI SECONDARY SCHOOL | Sub County | Mixed |
| 16311109 ODDA MIXED DAY SECONDARY SCHOOL | Sub County | Girls |
| 16311110 TOWNSHIP MIXED DAY SECONDARY SCHOOL | Sub County | Mixed |
| 16321202 NGURUNIT SECONDARY SCHOOL | Sub County | Boys |
| 16340203 WALDA COMPLEX SECONDARY SCHOOL | Sub County | Mixed |
| 16340204 URAN SECONDARY SCHOOL | Sub County | Mixed |
| 16358103 RUSO MIXED DAY SECONDARY SCHOOL | Sub County | Boys |
| 16358201 DUKANA HIGH SCHOOL | Sub County | Boys |
| 16359103 KOROLLE HIGH SCHOOL | Sub County | Mixed |
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