County Schools in Kenya form the third tier of secondary schools; after National and Extra County schools, respectively. The schools admit students from majorly within the country. Admissions to these schools is done online by the Ministry of Education.These schools are in 3 Categories i.e category 1 (C1), Category 2 (C2) and Category 3 (C3). The Schools are either of Mixed or single sex type.
Here are the County Schools in Makueni County:
| School Code | School Name | Category | Type |
| 18307104 | ST. LAWRENCE’S NZIU GIRLS | County | Girls |
| 18307106 | ST JOHNS MALIVANI SECONDARY SCHOOL | County | Mixed |
| 18307202 | UKIA GIRLS’ SECONDARY SCHOOL | County | Girls |
| 18307204 | ST. PAUL’S KYAMUTHEI SECONDARY SCHOOL | County | Boys |
| 18323103 | NZEVENI SECONDARY SCHOOL | County | Mixed |
| 18323105 | KIKIMA SECONDARY SCHOOL | County | Mixed |
| 18323109 | MBOONI A.I.C GIRLS SECONDARY SCHOOL | County | Girls |
| 18323201 | UTANGWA HIGH SCHOOL | County | Mixed |
| 18323205 | UTANGWA GIRLS’ SECONDARY SCHOOL | County | Girls |
| 18323301 | ITETANI SECONDARY SCHOOL | County | Boys |
| 18323302 | KIATINENI SECONDARY SCHOOL | County | Mixed |
| 18323304 | MULOONI SECONDARY SCHOOL | County | Mixed |
| 18323311 | IMALE SCHOOL | County | Boys |
| 18324101 | KIKUMINI SECONDARY SCHOOL | County | Mixed |
| 18324103 | GOOD SHEPHERD GIRLS SECONDARY SCHOOL | County | Girls |
| 18324113 | UTINI GIRLS SECONDARY SCHOOL | County | Girls |
| 18324201 | MULALA GIRLS’ HIGH SCHOOL | County | Girls |
| 18324225 | MUTANDA GIRLS SECONDARY SCHOOL | County | Girls |
| 18324303 | GIGIRI LIONS GIRLS’ SECONDARY SCHOOL | County | Girls |
| 18324304 | GIGIRI NZEENI LIONS BOYS SECONDARY SCHOOL | County | Boys |
| 18325101 | JOANNA CHASE SECONDARY SCHOOL | County | Boys |
| 18325102 | MUTHINGIINI HIGH SCHOOL | County | Mixed |
| 18325103 | DARAJANI SECONDARY SCHOOL | County | Mixed |
| 18325104 | KITHINGIISYO SECONDARY SCHOOL | County | Mixed |
| 18325109 | ST. MARY’S KOMBOYOO GIRLS SECONDARY SCHOOL | County | Girls |
| 18325117 | KASUE GIRLS’ SECONDARY SCHOOL | County | Girls |
| 18325203 | ST. MARY’S GIRLS HIGH SCHOOL KINYAMBU | County | Girls |
| 18325205 | KISAYANI SECONDARY SCHOOL | County | Mixed |
| 18325206 | KYANGINYWA HIGH SCHOOL | County | Mixed |
| 18325207 | KATHYAKA SECONDARY SCHOOL | County | Mixed |
| 18325301 | UTITHI SECONDARY SCHOOL | County | Mixed |
| 18325303 | SUMBI SECONDARY SCHOOL | County | Mixed |
| 18325307 | KIVUTHINI SECONDARY SCHOOL | County | Mixed |
| 18325309 | KITHYULULU SECONDARY SCHOOL | County | Mixed |
| 18335208 | KATHONZWENI GIRLS SECONDARY SCHOOL | County | Girls |
| 18335301 | AIC MAVINDINI BOYS SECONDARY SCHOOL | County | Mixed |
| 18335308 | ST. JUDE GIRLS SECONDARY SCHOOL | County | Girls |
| 18335401 | KIANGINI SECONDARY SCHOOL | County | Girls |
| 18336102 | THOMEANDU SECONDARY SCHOOL | County | Boys |
| 18336103 | KILUNGU BOYS HIGH SCHOOL | County | Boys |
| 18336104 | ST.LUCIA GIRLS’ HIGH SCHOOL- KAUTI | County | Girls |
| 18336106 | INYOKONI SECONDARY SCHOOL | County | Mixed |
| 18336202 | NDOLO SECONDARY SCHOOL | County | Mixed |
| 18346103 | KITETA BOYS SECONDARY SCHOOL | County | Boys |
| 18346104 | KITETA GIRLS SECONDARY SCHOOL | County | Girls |
| 18346106 | NDULUKU SECONDARY SCHOOL | County | Boys |
| 18346123 | KAKO SECONDARY SCHOOL | County | Mixed |
| 18346201 | KITOTO SECONDARY SCHOOL | County | Mixed |
| 18346202 | ITITU SECONDARY SCHOOL | County | Girls |
| 18346212 | KALAWA GIRLS’ SECONDARY SCHOOL | County | Girls |
| 18347402 | KASIKEU GIRLS HIGH SCHOOL | County | Girls |
| 18347403 | ENGULI ABC SECONDARY SCHOOL | County | Mixed |
| 18347410 | MBIINI SECONDARY SCHOOL | County | Boys |
| 18347412 | NDULUNI SECONDARY SCHOOL | County | Mixed |
| 18347504 | MUKAA GIRLS’ HIGH SCHOOL | County | Girls |
| 18347505 | KITAINGO BOYS’ SECONDARY SCHOOL | County | Boys |
| 18347506 | ABC MAIANI BOYS HIGH SCHOOL | County | Boys |
| 18347508 | MT. CARMEL GIRLS’ SECONDARY SCHOOL – KILOME | County | Girls |
| 18347512 | KIONGWANI GIRLS SECONDARY SCHOOL | County | Girls |
| 18347513 | KIONGWANI BOYS HIGH SCHOOL | County | Boys |
| 18347522 | SALVATION ARMY MAIANI SECONDARY SCHOOL | County | Mixed |
| 18348102 | IKUNGU SECONDARY SCHOOL | County | Girls |
| 18348103 | SHINE STAR KAI SECONDARY SCHOOL | County | Mixed |
| 18348110 | ST. ANNS KIBOKO SECONDARY SCHOOL | County | Girls |
| 18348120 | NGUUMO GIRLS SECONDARY SCHOOL | County | Girls |
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